Abstract
Discovering biomarkers is central to the research and treatment of degenerative central nervous system (CNS) diseases, playing a crucial role in early diagnosis, disease monitoring, and the development of new treatments, particularly for challenging conditions like degenerative CNS diseases and glioblastoma (GBM). This study analyzed gene expression data from a public database, employing differential expression analyses and Gene Co-expression Network Analysis (WGCNA) to identify gene modules associated with degenerative CNS diseases and GBM. Machine learning methods, including Random Forest, Least Absolute Shrinkage and Selection Operator (LASSO), and Support Vector Machine - Recursive Feature Elimination (SVM-RFE), were used for case-control differentiation, complemented by functional enrichment analysis and external validation of key genes. Ninety-five commonly altered genes related to degenerative CNS diseases and GBM were identified, withandemerging as significant through machine learning screening. Receiver operating characteristic (ROC) analysis confirmed their diagnostic value, which was further validated externally, indicating their elevated expression in controls. The study's integration of WGCNA and machine learning uncoveredandas potential biomarkers for degenerative CNS diseases and GBM, suggesting their utility in diagnostics and as therapeutic targets. This contributes new perspectives on the pathogenesis and treatment of these complex conditions.
Overview
- The study aimed to identify biomarkers for degenerative central nervous system (CNS) diseases and glioblastoma (GBM) by analyzing gene expression data from a public database.
- The researchers used differential expression analysis, Gene Co-expression Network Analysis (WGCNA), and machine learning methods to identify gene modules associated with the diseases.
- The primary objective was to uncover novel biomarkers for early diagnosis, disease monitoring, and treatment development, particularly for challenging conditions like degenerative CNS diseases and GBM.
Comparative Analysis & Findings
- Ninety-five commonly altered genes related to degenerative CNS diseases and GBM were identified, with machine learning screening confirming their significance.
- Receiver operating characteristic (ROC) analysis validated the diagnostic value of these genes, which were found to have elevated expression in controls.
- Functional enrichment analysis and external validation further supported the key genes identified, highlighting their potential as biomarkers for diagnosis and treatment targets.
Implications and Future Directions
- The study's integration of WGCNA and machine learning has the potential to provide new biomarkers for degenerative CNS diseases and GBM, altering our understanding of the pathogenesis and treatment of these complex conditions.
- The discovery of potential biomarkers for degenerative CNS diseases and GBM may enable early diagnosis, disease monitoring, and targeted treatments, improving patient outcomes.
- Future studies can build on this research to explore the functional relevance of these genes and their potential therapeutic applications, as well as investigate their utility in combination with other biomarkers and diagnostic tools.