One-carbon metabolism is distinct metabolic signature for proliferative intermediate exhausted T cells of ICB-resistant cancer patients.

in Cell death discovery by Ye-Chan Park, Yeseong Hwang, Jae Woong Jeong, Chae Min Lee, Minki Kim, Sugyeong Jo, Seyeon Joo, Nahee Hwang, Sungsoon Fang

TLDR

  • The study found that 1CM gene profiles were enriched in proliferative Tex T cells, which were associated with decreased immunotherapy response in non-responders.
  • Targeting 1CM may be a potential therapeutic strategy to enhance immunotherapy efficacy by mitigating Tex proliferation.

Abstract

One-carbon metabolism (1CM) has been reported to promote cancer progression across various malignancies. While 1CM is critical for cell proliferation by enhancing nucleotide synthesis, its physiological roles within different cell types in the tumor immune microenvironment (TIME) still remain unclear. In this study, we analyzed bulk-RNA sequencing and single-cell RNA sequencing (scRNA-seq) data from lung adenocarcinoma (LUAD) patients to elucidate the functional roles of 1CM within the TIME. Moreover, we examined scRNA-seq data from patients treated with immunotherapy across various cancers, including LUAD, glioblastoma, renal cell carcinoma, colorectal cancer, and triple-negative breast cancer. Compared to other cell types, 1CM gene profiles are significantly enriched in a specific subset of T cells. Intriguingly, these high-1CM T cells are identified as proliferative intermediate exhausted T cells (Tex). Furthermore, these proliferative Texreceived the most robust CD137 signaling. Consistently, analysis of scRNA-seq data from LUAD patients undergoing anti-PD1 immunotherapy demonstrated that proliferative Texexhibited higher 1CM scores and increased CD137 signaling. This observation was particularly pronounced in non-responders to immunotherapy, where the Texpopulation was significantly expanded. We further established that 1CM is a prominent signaling pathway in proliferative Texin patients resistant to immunotherapy across multiple cancer types. Collectively, we identify CD137 signaling as a distinctive pathway in proliferative Texof LUAD patients who do not respond to immunotherapy. These findings propose that targeting 1CM may represent a novel therapeutic strategy to enhance the efficacy of immunotherapy by mitigating Texproliferation in diverse cancers.

Overview

  • The study aimed to understand the functional roles of one-carbon metabolism (1CM) in the tumor immune microenvironment (TIME) of lung adenocarcinoma (LUAD) patients, and its potential effects on immunotherapy response.
  • The researchers used bulk-RNA sequencing and single-cell RNA sequencing (scRNA-seq) data to analyze the gene profiles of different cell types in the TIME, including T cells, macrophages, and cancer cells.
  • The primary objective was to identify the specific roles of 1CM in the TIME, and its potential impact on immunotherapy response, particularly in non-responders.

Comparative Analysis & Findings

  • The study found that 1CM gene profiles were significantly enriched in a subset of T cells, specifically proliferative intermediate exhausted T cells (Tex), which are known to play a crucial role in cancer immune evasion.
  • Proliferative Tex exhibited higher 1CM scores and increased CD137 signaling compared to other T cell subsets, suggesting that 1CM may be a key regulator of Tex proliferation.
  • The analysis of scRNA-seq data from LUAD patients undergoing anti-PD1 immunotherapy demonstrated that non-responders had a significantly expanded Tex population with higher 1CM scores and increased CD137 signaling.

Implications and Future Directions

  • The study proposes that targeting 1CM may be a novel therapeutic strategy to enhance the efficacy of immunotherapy by mitigating Tex proliferation in diverse cancers.
  • Further research is needed to understand the exact mechanisms by which 1CM regulates Tex proliferation and to identify potential therapeutic targets for 1CM inhibition.
  • Elucidating the molecular mechanisms underlying Tex proliferation and 1CM regulation may also provide insights into developing novel immunotherapy strategies for diverse cancer types.