Investigating the relevance of nucleotide metabolism in the prognosis of glioblastoma through bioinformatics models.

in Scientific reports by Lu-Wei Jiang, Zi-Xuan Li, Xiao Ji, Tao Jiang, Xu-Kou Wang, Chuan-Bo Weng

TLDR

  • A study analyzed genes involved in nucleotide metabolism to identify biomarkers for glioblastoma prognosis,
  • Four genes were identified as significant biomarkers, and patients with high-risk group had a higher overall mutation burden,
  • the study provides valuable insights for further research and enhances our understanding of GBM.

Abstract

Nucleotide metabolism (NM) is a fundamental process that enables the rapid growth of tumors. Glioblastoma (GBM) primarily relies on NM for its invasion, leading to severe clinical outcomes. This study focuses on NM to identify potential biomarkers associated with GBM. Publicly available databases were used as the primary data source for this study, excluding biological tissue samples. We identified and evaluated key genes involved in NM, followed by developing and validating a prognostic model. Patients were classified into high- and low-risk groups based on this model, and the two groups were compared with respect to cellular immunity and mutation profiles. The biomarkers were confirmed using real-time reverse-transcriptase polymerase chain reaction. Our study identified UPP1, CDA, NUDT1, and ADSL as significant biomarkers associated with prognosis, all of which were upregulated in patients with GBM. The risk score and clinical factors such as age, sex, GBM stage, MGMT promoter status, and IDH mutation status were found to be independent prognostic factors. Patients with glioblastoma showed a higher overall mutation burden. Using bioinformatics, this study identifies key factors associated with NM in GBM that may influence patient prognosis. This study enhances our understanding of GBM, provides valuable insights for further research, and serves as a reference for evaluating patient outcomes.

Overview

  • The study aims to identify potential biomarkers associated with glioblastoma (GBM) by analyzing nucleotide metabolism (NM),
  • using publicly available databases and excluding biological tissue samples,
  • the study focuses on developing a prognostic model based on key genes involved in NM and evaluating patient outcomes.

Comparative Analysis & Findings

  • The study identified UPP1, CDA, NUDT1, and ADSL as significant biomarkers associated with prognosis,
  • which were upregulated in patients with GBM,
  • compared to patients with low-risk group, patients with high-risk group had a higher overall mutation burden.

Implications and Future Directions

  • The study provides valuable insights for further research and enhances our understanding of GBM,
  • the identified biomarkers may serve as a reference for evaluating patient outcomes,
  • further studies are needed to confirm the findings and evaluate the potential therapeutic applications of the identified biomarkers.